GgaEX0022056 @ galGal4
Exon Skipping
Gene
ENSGALG00000015056 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr2:102828758-102833737:+
Coord C1 exon
chr2:102828758-102828914
Coord A exon
chr2:102831767-102831905
Coord C2 exon
chr2:102833595-102833737
Length
139 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTATTTTTCCCAGCCA
3' ss Score
7.51
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
ACCTGAGAAAAACTACTTTTTCCCTGATCTGCACCACATGAAGTTTGAGATTGAAGATGGTACAACAGTCAAGGGAAAGGAAATTCGGTTTGGCTATGATCCTGAGGAATTTCCTAGCTTCAGTTGGAGAGGATATGCCCGGATGTCCTCTATACAA
Seq A exon
CCAGAGGTGGTTGTGACTGTCACTGTGGCTTCCCCTAAGCTCTTCCACCTAGTCCTTCGCTATGTCAACCTGGGTTCAAAAAGCTCTAAAGGAAAGATTTCAGTTGCTGAGGGAAAACATTTTGGCACTAATTATACTT
Seq C2 exon
GTGCTGCTCAGAGCAAAGAGTTTGTCTTCCCACCCAGCAAGGAGCCAGCTTTTGTCACGATCCCAGGAAAAAACTCCACAGAGCCTTTCTCACTGGTTTCAGGAACATGGACTGTCAGTATAGTAGCAGAAGATGTCCTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015056_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCTGATCTGCACCACATG
R:
TCCTGAAACCAGTGAGAAAGGC
Band lengths:
242-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]