MmuEX6107475 @ mm10
Exon Skipping
Gene
ENSMUSG00000015647 | Lama5
Description
laminin, alpha 5 [Source:MGI Symbol;Acc:MGI:105382]
Coordinates
chr2:180195555-180196324:-
Coord C1 exon
chr2:180196168-180196324
Coord A exon
chr2:180195881-180196014
Coord C2 exon
chr2:180195555-180195697
Length
134 bp
Sequences
Splice sites
3' ss Seq
CTTGTACCACCATAGCCCAGGAT
3' ss Score
-1.64
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GCCAGCGAAGGACCACTACTTGCCAGACCTGCACCACATGCGGCTGGAACTAGAGGAGGCGGCCACTCCCGAGGGCCACGCTGTACGCTTTGGCTTCAACCCCCTGGAGTTTGAGAACTTTAGCTGGAGAGGCTACGCACACATGATGGCTATCCAG
Seq A exon
GATTGTGGCCAGGCTGAACGTGACCTCCCCTGACCTCTTTCGGCTGGTTTTCCGATATGTCAACCGTGGATCAACCAGCGTGAATGGGCAGATCTCTGTTCGTGAAGAGGGCAAGCTTTCCAGCTGTACCAACT
Seq C2 exon
GCACAGAGCAGAGCCAGCCAGTGGCTTTCCCACCCAGCACTGAGCCTGCCTTTGTCACTGTGCCCCAGAGGGGCTTTGGGGAACCCTTTGTGCTGAACCCCGGCATCTGGGCCTTGCTGGTCGAGGCTGAAGGTGTACTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015647-'37-40,'37-39,38-40
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.021 C2=0.042
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(26.7=22.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTACTTGCCAGACCTGCAC
R:
GTTCAGCACAAAGGGTTCCCC
Band lengths:
242-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types