MmuEX6107475 @ mm9
Exon Skipping
Gene
ENSMUSG00000015647 | Lama5
Description
laminin, alpha 5 [Source:MGI Symbol;Acc:MGI:105382]
Coordinates
chr2:179930260-179931029:-
Coord C1 exon
chr2:179930873-179931029
Coord A exon
chr2:179930586-179930724
Coord C2 exon
chr2:179930260-179930402
Length
139 bp
Sequences
Splice sites
3' ss Seq
GTTGTCTTGTACCACCATAGCCC
3' ss Score
5.74
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GCCAGCGAAGGACCACTACTTGCCAGACCTGCACCACATGCGGCTGGAACTAGAGGAGGCGGCCACTCCCGAGGGCCACGCTGTACGCTTTGGCTTCAACCCCCTGGAGTTTGAGAACTTTAGCTGGAGAGGCTACGCACACATGATGGCTATCCAG
Seq A exon
CCCAGGATTGTGGCCAGGCTGAACGTGACCTCCCCTGACCTCTTTCGGCTGGTTTTCCGATATGTCAACCGTGGATCAACCAGCGTGAATGGGCAGATCTCTGTTCGTGAAGAGGGCAAGCTTTCCAGCTGTACCAACT
Seq C2 exon
GCACAGAGCAGAGCCAGCCAGTGGCTTTCCCACCCAGCACTGAGCCTGCCTTTGTCACTGTGCCCCAGAGGGGCTTTGGGGAACCCTTTGTGCTGAACCCCGGCATCTGGGCCTTGCTGGTCGAGGCTGAAGGTGTACTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015647-'29-34,'29-33,30-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.021 C2=0.042
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(26.7=22.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTACTTGCCAGACCTGCAC
R:
GTTCAGCACAAAGGGTTCCCC
Band lengths:
242-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: