GgaEX0007356 @ galGal3
Exon Skipping
Gene
ENSGALG00000005321 | LAMA5
Description
NA
Coordinates
chr20:7835619-7840517:-
Coord C1 exon
chr20:7840361-7840517
Coord A exon
chr20:7838547-7838685
Coord C2 exon
chr20:7835619-7835755
Length
139 bp
Sequences
Splice sites
3' ss Seq
CCCTTTCTCTCTCCCACCAGCCC
3' ss Score
11.3
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
ACCCGTGCGGGACCATTATTTCCCTGACCTTCACCACCTGAAGTTTGAGCTGGAGGAAGGGACCACGCCAGCCGGCCGGGCCGTGCGCTTCGGCTACAACCCGCTGGAGTTCGAGGGTTTCAGCTGGCGAGGATACGCACAGATGTCCTCCATCCAG
Seq A exon
CCCAAGGTAGTGGTGACTCTCAATGTGACCTCCCCCGACCTCTTCCGCCTCGTCTTCCGCTACGTCAGCCGGGGGTCCGCCATTGTTGAAGGGAGGGTCTCGGTCGTTGAGGAAGGAAAGTTTAATATTTGTGGCAACT
Seq C2 exon
AGCAGAGCAAGCAGATTGTCTTTGCTCCCAGCACGGAGCCAGCCTTTGTCACCGTCCCCCAGAACAGCTTTGGGGAGCCCTTCGTACTCAACCCCAACACGTGGTCTCTGATTGTCGAAGCAGAGGGTGTGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005321_MULTIEX2-1/2=C1-C2
Average complexity
C1*
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(21.4=17.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCCTGACCTTCACCACCT
R:
CCACGTGTTGGGGTTGAGTAC
Band lengths:
243-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]