RnoEX6020604 @ rn6
Exon Skipping
Gene
ENSRNOG00000053691 | Lama5
Description
laminin subunit alpha 5 [Source:RGD Symbol;Acc:621023]
Coordinates
chr3:175572323-175573086:-
Coord C1 exon
chr3:175572930-175573086
Coord A exon
chr3:175572646-175572784
Coord C2 exon
chr3:175572323-175572465
Length
139 bp
Sequences
Splice sites
3' ss Seq
GTTGTCTTACACCACCGCAGCCC
3' ss Score
5.73
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GCCAGCGAAGGACCACTACTTGCCAGACCTGCATCACATACGGCTGGAACTAGAGGAGGCGGCCACTCCCGAGGGCCATGCCGTCCGCTTTGGCTTCAACCCCCTGGAGTTTGAGAACTTCAGCTGGAGAGGCTACGCACATATGACGGCTATCCAG
Seq A exon
CCCAGGATCGTGGCCAGGCTGAACGTGACCTCCCCTGACCTCTTTCGGCTGGTCTTCCGATATGTTAACCGTGGATCGACCAGCGTGAATGGGCAGGTCTCTGTTCGGGAAGAGGGCAAGTTTTCCAGCTGTACCAACT
Seq C2 exon
GCACAGAGCAGAGCCAGCCAGTGGCCTTCCCACCCAGCACAGAGCCTGCCTTTGTCACCGTGCCCCAGAGGGGCTTTGGGGAGCCCTTTGTGCTGAACCCCGGCACCTGGGCCTTGCTGGTTGAGGCTGAAGGTGTACTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053691-'27-27,'27-26,30-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.021 C2=0.042
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(25.0=20.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGGCTGGAACTAGAGGAGG
R:
CTTCAGCCTCAACCAGCAAGG
Band lengths:
251-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]