BtaEX6065620 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003061 | LAMA5
Description
laminin, alpha 5 [Source:HGNC Symbol;Acc:HGNC:6485]
Coordinates
chr13:55409876-55410599:+
Coord C1 exon
chr13:55409876-55410032
Coord A exon
chr13:55410157-55410295
Coord C2 exon
chr13:55410457-55410599
Length
139 bp
Sequences
Splice sites
3' ss Seq
TGCCCCCAACCCCACTGCAGCCC
3' ss Score
6.06
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GCCTGCTCAGGACCACTATCTCCCTGACTTGCACCACCTGCGCCTGGAGCTCGAGGAGGCGGCCACGCCTGAGGGCCACGCTGTGCGCTTCGGCTTCAACCCCCTGGAGTTCGAGAACTTCAGCTGGAGGGGCTATGCACAGATGACACCCATCCAG
Seq A exon
CCCAGGATCGTGGCACAGCTGAACCTGACCTCCCCCGACCTCTTCCGGCTCGTCTTCCGTTACGTCAACCGCGGGCCCACGAGTGTGAGCGGGCGGGTTTCCATGCGAGACCAGGACAAGTTCACCACGTGTCCCAACT
Seq C2 exon
GCACAGAACAGAGCCAGCCCGTGGCCTTCCCGCCCAGCACCGAGCCTGCCTTTGTCACCGTGCCCCAGAGGGGCCTGGGGGAGCCCTTCGTGCTGAACCCTGGCGCCTGGGCCCTGCTCGTGGAGGCCGAGGGGGTGCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003061-'26-27,'26-26,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.234 C2=0.146
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(25.0=20.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCAGGACCACTATCTCCC
R:
GTTCAGCACGAAGGGCTCC
Band lengths:
252-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]