GgaEX0007755 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr16:385866-386188:+
Coord C1 exon
chr16:385866-385976
Coord A exon
chr16:386058-386087
Coord C2 exon
chr16:386175-386188
Length
30 bp
Sequences
Splice sites
3' ss Seq
GCTGACCTCGTCTTGCTCAGTTT
3' ss Score
5.31
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
AGCCCCCGGGGGATGTGAGCAGGAGCAAGCTGCTGATGGGCGTCGGGGGCTTTGTGCTGGGGCTCGTCTACCTTGCACTGGGGATCTTCTTCTTCCTGTGCAGTAAGAAAG
Seq A exon
TTTCAGGGCAACCTGATCCAACCAGTCCAG
Seq C2 exon
GGATCCTGAACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005562-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.455 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event