GgaINT0123420 @ galGal3
Intron Retention
Description
NA
Coordinates
chr16:386058-386188:+
Coord C1 exon
chr16:386058-386087
Coord A exon
chr16:386088-386174
Coord C2 exon
chr16:386175-386188
Length
87 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
TTCTCCCTCTTTCCTTACAGGGA
3' ss Score
12.76
Exon sequences
Seq C1 exon
TTTCAGGGCAACCTGATCCAACCAGTCCAG
Seq A exon
GTAATGTCTCATTCCCCCAGTGACATTACTGTACTCAGAGGAGCCCCAGGCCCGCTGTGGTCCTTATTTCTCCCTCTTTCCTTACAG
Seq C2 exon
GGATCCTGAACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005562:ENSGALT00000041142:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.455 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]