GgaEX0008516 @ galGal3
Exon Skipping
Gene
ENSGALG00000006031 | BRDT
Description
NA
Coordinates
chr8:14996991-14999216:-
Coord C1 exon
chr8:14999116-14999216
Coord A exon
chr8:14997512-14997576
Coord C2 exon
chr8:14996991-14997139
Length
65 bp
Sequences
Splice sites
3' ss Seq
AATTTTTATTCTTCCATCAGGTC
3' ss Score
8.67
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
TGATGGGACTAAAGCTGAAAAAACACTAACTGATCTAGATGAAGTTCAACACAAGGCCAGTGAGAGAACTGCTGACTCAAAATCTATAAACCAAGAGCAGA
Seq A exon
GTCGTTGTAGTACACCTAATGGTACAAAGACTCTAGAGACAAAATCCCAGAGTTTTCCAGAAAGG
Seq C2 exon
GCCGCAGGAATTAAGAACATAGATTCCTGGGTAAGCTTGTGCAAAATGATGACGCTTCCAGCGCCAATAAAGTCATCTGCTGAGAGCTTCAAGCATTTCAGGAAAGTAGCCTTACAGAAGGCAGCTGGGCAAGCACAGGAAAAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006031-'15-21,'15-20,17-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.500 C2=0.160
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGTGAGAGAACTGCTGAC
R:
GCCCAGCTGCCTTCTGTAAG
Band lengths:
176-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]