GgaEX0008516 @ galGal4
Exon Skipping
Gene
ENSGALG00000006031 | BRDT
Description
bromodomain, testis-specific [Source:HGNC Symbol;Acc:HGNC:1105]
Coordinates
chr8:13244040-13246297:-
Coord C1 exon
chr8:13246165-13246297
Coord A exon
chr8:13244561-13244625
Coord C2 exon
chr8:13244040-13244188
Length
65 bp
Sequences
Splice sites
3' ss Seq
AATTTTTATTCTTCCATCAGGTC
3' ss Score
8.67
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
GTATCCAACGCAACTTTCCCTGTTGACAATGCTGATGGGACTAAAGCTGAAAAAACACTAACTGATCTAGATGAAGTTCAACACAAGGCCAGTGAGAGAACTGCTGACTCAAAATCTATAAACCAAGAGCAGA
Seq A exon
GTCGTTGTAGTACACCTAATGGTACAAAGACTCTAGAGACAAAATCCCAGAGTTTTCCAGAAAGG
Seq C2 exon
GCCGCAGGAATTAAGAACATAGATTCCTGGGTAAGCTTGTGCAAAATGATGACGCTTCCAGCGCCAATAAAGTCATCTGCTGAGAGCTTCAAGCATTTCAGGAAAGTAGCCTTACAGAAGGCAGCTGGGCAAGCACAGGAAAAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006031_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.864 C2=0.280
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGTGAGAGAACTGCTGAC
R:
GCCCAGCTGCCTTCTGTAAG
Band lengths:
176-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]