GgaEX0008714 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr20:9726251-9727763:+
Coord C1 exon
chr20:9726251-9726443
Coord A exon
chr20:9727163-9727297
Coord C2 exon
chr20:9727545-9727763
Length
135 bp
Sequences
Splice sites
3' ss Seq
GCATCCACCATTTGTTCCAGGTT
3' ss Score
6.37
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
GCACAAACATACCTTGATGGAAGCTCGTGCGTATGAACTGGCGTGCCACGACGTCATCTTGTGTACATGCTCCTCTGCATCTGCCGGCTCCCTGGAGAAGCTCAATGTCAAGCAGATACTCATCGATGAGTGCGCCATGTCCACAGAACCCGAGACCCTCATCCCTTTGGTCAGCCATAAACATGCTGAGAAG
Seq A exon
GTTGTTTTGCTTGGGGATCACAAACAGCTGAAGCCTGTGGTCAACAATGACTTCTGCAAGAGCCTTGGCATGGAGACGTCTCTTTTTGAGCGCTACCAGAAGCAGGCATGGATGCTGGACACGCAGTACCGCATG
Seq C2 exon
CACAAAAACATCTGTGAGTTCCCATCCCAGGAGTTCTATGAACATCGCCTGAAAACCTGTCCCCAGCTTCTTCGCATACCCAGCGTCCTATACCACAAGAATAACCGCTGCTGCCCCATCATCTTCGGGCACGTGGAGGGGAAGGAGCAGAGCCTCGTGATTTCCACCGAGGAAGGAAATGAGAACTCCAAAGCTAACCCAGAAGAAGTGGAGCAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006138_CASSETTE4
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.260
Domain overlap (PFAM):
C1:
PF130861=AAA_11=FE(25.7=100)
A:
PF130861=AAA_11=PD(6.4=35.6),PF130871=AAA_12=PU(10.1=46.7)
C2:
PF130871=AAA_12=FE(34.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGCTCGTGCGTATGAAC
R:
GTATGCGAAGAAGCTGGGGAC
Band lengths:
255-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]