MmuEX6107662 @ mm9
Exon Skipping
Gene
ENSMUSG00000027580 | BC006779
Description
cDNA sequence BC006779 [Source:MGI Symbol;Acc:MGI:2385169]
Coordinates
chr2:180963929-180964967:-
Coord C1 exon
chr2:180964772-180964967
Coord A exon
chr2:180964261-180964614
Coord C2 exon
chr2:180963929-180964085
Length
354 bp
Sequences
Splice sites
3' ss Seq
ATAGCTATCTGTGCCTCTAGGTG
3' ss Score
8.64
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GTACAGGAGAGTCTTGGGGAAGGCACGCAAACATGAACTGGAGCGGCACTCGGTCATCCTGTGCACGTGCTCCTGTGCGGCATCAAAGAGCCTGAAAATTCTGAATGTTCGACAGATCCTTATCGACGAGGCAGGCATGGCCACTGAGCCAGAGACCCTTATCCCCTTGGTGTGCTTCTCAAAGACGGTTGAGAAG
Seq A exon
GTGGTTCTGCTTGGAGACCACAAGCAGCTTCGGCCTGTGGTCAAGAGTGAACAGCTGCAGAGTCTGGGGATGGATCGGTCTCTCTTTGAGAGGTACCACAGGGATGCCATCATGCTGGACACACAGTACCGTATGCATAAGGACATCTGTTCCTTCCCCTCCGTGGAGTTCTATGGGGGAAAGCTAAAGACCTGGTCTGACCTGAGGCGTCTGCCTAGTATCCTGGGTCACACTGGCAAGCCGAGCTGTTCCGTCATCTTCGGCTCTGTGCAGGGCCATGAGCAGAAGCTGCTGGTGTCCACCGAGGATGGCAATGAGAACTCTAGGGCCAACCCAGAGGAAGTCACACAGGTG
Seq C2 exon
GTCCGCATCATAAAGCAGTTGACCCTGGATCGGACGGTGGATCCCAAAGATATTGCTGTCCTTACACCCTACAATGCACAGGCTGCTGCAATCAGTAGGGGCCTCATGCAAAGAGGAGTCACCGGAGTGACTGTGACCTCTATTACCAAGAGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027580-'17-19,'17-18,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.145 C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=FE(26.0=100)
A:
PF130861=AAA_11=PD(6.4=13.6),PF130871=AAA_12=PU(45.4=79.7)
C2:
PF130871=AAA_12=PD(9.3=45.5),PF130871=AAA_12=PU(25.0=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGAGAGTCTTGGGGAAGG
R:
CCTGGCTCTTGGTAATAGAGGT
Band lengths:
351-705
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: