GgaEX6023232 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr20:9727163-9728184:+
Coord C1 exon
chr20:9727163-9727297
Coord A exon
chr20:9727545-9727763
Coord C2 exon
chr20:9728028-9728184
Length
219 bp
Sequences
Splice sites
3' ss Seq
TATTTATTTATTTATTCCAGCAC
3' ss Score
6.82
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
Exon sequences
Seq C1 exon
GTTGTTTTGCTTGGGGATCACAAACAGCTGAAGCCTGTGGTCAACAATGACTTCTGCAAGAGCCTTGGCATGGAGACGTCTCTTTTTGAGCGCTACCAGAAGCAGGCATGGATGCTGGACACGCAGTACCGCATG
Seq A exon
CACAAAAACATCTGTGAGTTCCCATCCCAGGAGTTCTATGAACATCGCCTGAAAACCTGTCCCCAGCTTCTTCGCATACCCAGCGTCCTATACCACAAGAATAACCGCTGCTGCCCCATCATCTTCGGGCACGTGGAGGGGAAGGAGCAGAGCCTCGTGATTTCCACCGAGGAAGGAAATGAGAACTCCAAAGCTAACCCAGAAGAAGTGGAGCAGGCG
Seq C2 exon
GTGAGGACTGCGAAGCAGCTGACACTAGATGGCACCATCCGGCCGCAGAGCATCGCCATCCTCAGCCCTTACAACGCCCAGGTGTCCGAGATCAACAAGCGCCTGCTGAAAGAAGGCATCCGCGGGGTCACCGTCTGCACCATCATGAAGAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006138-'16-19,'16-18,17-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.260 C2=0.019
Domain overlap (PFAM):
C1:
PF130861=AAA_11=PD(6.4=35.6),PF130871=AAA_12=PU(10.1=46.7)
A:
PF130871=AAA_12=FE(34.8=100)
C2:
PF130871=AAA_12=FE(25.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTTTTGCTTGGGGATCACA
R:
CTTGGCTCTTCATGATGGTGCA
Band lengths:
292-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]