GgaEX6023232 @ galGal4
Exon Skipping
Gene
ENSGALG00000006138 | HELZ2
Description
helicase with zinc finger 2, transcriptional coactivator [Source:HGNC Symbol;Acc:HGNC:30021]
Coordinates
chr20:14275121-14276142:+
Coord C1 exon
chr20:14275121-14275255
Coord A exon
chr20:14275503-14275721
Coord C2 exon
chr20:14275986-14276142
Length
219 bp
Sequences
Splice sites
3' ss Seq
TATTTATTTATTTATTCCAGCAC
3' ss Score
6.82
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
Exon sequences
Seq C1 exon
GTTGTTTTGCTTGGGGATCACAAACAGCTGAAGCCTGTGGTCAACAATGACTTCTGCAAGAGCCTTGGCATGGAGACGTCTCTTTTTGAGCGCTACCAGAAGCAGGCATGGATGCTGGACACGCAGTACCGCATG
Seq A exon
CACAAAAACATCTGTGAGTTCCCATCCCAGGAGTTCTATGAACATCGCCTGAAAACCTGTCCCCAGCTTCTTCGCATACCCAGCGTCCTATACCACAAGAATAACCGCTGCTGCCCCATCATCTTCGGGCACGTGGAGGGGAAGGAGCAGAGCCTCGTGATTTCCACCGAGGAAGGAAATGAGAACTCCAAAGCTAACCCAGAAGAAGTGGAGCAGGCG
Seq C2 exon
GTGAGGACTGCGAAGCAGCTGACACTAGATGGCACCATCCGGCCGCAGAGCATCGCCATCCTCAGCCCTTACAACGCCCAGGTGTCCGAGATCAACAAGCGCCTGCTGAAAGAAGGCATCCGCGGGGTCACCGTCTGCACCATCATGAAGAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006138-'16-21,'16-20,17-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.260 C2=0.019
Domain overlap (PFAM):
C1:
PF130861=AAA_11=PD(6.4=35.6),PF130871=AAA_12=PU(10.1=46.7)
A:
PF130871=AAA_12=FE(34.8=100)
C2:
PF130871=AAA_12=FE(25.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTTTTGCTTGGGGATCACA
R:
CTTGGCTCTTCATGATGGTGCA
Band lengths:
292-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]