DreEX6028562 @ danRer10
Exon Skipping
Gene
ENSDARG00000012600 | HELZ2 (2 of 3)
Description
helicase with zinc finger 2, transcriptional coactivator [Source:HGNC Symbol;Acc:HGNC:30021]
Coordinates
chr2:42102331-42103190:-
Coord C1 exon
chr2:42103056-42103190
Coord A exon
chr2:42102763-42102984
Coord C2 exon
chr2:42102331-42102487
Length
222 bp
Sequences
Splice sites
3' ss Seq
ACATTAAACTCTTCCTTTAGCAT
3' ss Score
7.26
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
GTTGTGCTGTTGGGGGATCACAAACAGCTGCGCCCGATCGTGAAGAATAACCATGTGCGGAGATTAGGCATGACACGCTCTCTGTTTGAACGCTACATGGACAGAGCAATAATGCTTGACACCCAGTACAGAATG
Seq A exon
CATGAAGAGATCTGCAAATTCCCATCAGAGGCATACTATAACGATATGCTGAAAACTGTTGTGCGTGAACGGACAAGCGTGCTGAATGCTGAAACTGAGGGAAGAAGACAAAGCAAGCGCATTCTGTTTGGAGATATACGTGGAGAAGAAATCGGTTTAGTTGTTTCAACTGCACGAGGAAACGAGAACTCAAAAGCTAACTTTGATGAAGTTAAGAAAGCG
Seq C2 exon
GTTGAGATTTGTATTCAGCTGGTAACAGTGGGCCGTGTGAGACCAGAGGACATTGCCATTCTATCACCCTATAATGCACAGGTGGCTCAGATCAGAGAGAGACTGTCTGATTTCGAATTGAAGGGATTCACTGTCACCACCATTACAAAGAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012600-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.054 C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=PD(6.5=35.6),PF130871=AAA_12=PU(10.1=46.7)
A:
PF130871=AAA_12=FE(35.1=100)
C2:
PF130871=AAA_12=FE(25.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTGCTGTTGGGGGATCAC
R:
CTTGGCTCTTTGTAATGGTGGTG
Band lengths:
292-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]