DreEX0037301 @ danRer10
Exon Skipping
Gene
ENSDARG00000016527 | helz2
Description
helicase with zinc finger 2, transcriptional coactivator [Source:ZFIN;Acc:ZDB-GENE-120920-1]
Coordinates
chr6:58613146-58616356:+
Coord C1 exon
chr6:58613146-58613280
Coord A exon
chr6:58613475-58613684
Coord C2 exon
chr6:58616203-58616356
Length
210 bp
Sequences
Splice sites
3' ss Seq
TTATATACCTTCTCTACCAGCAA
3' ss Score
6.13
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
ATTGTCCTTCTTGGCGATCACAAACAGCTTCAACCAGTGGTCCACTGCGAGGTGGCGGAGCGATTAGGAATGAGCAGATCTCTTTTTGAACGTTACATGGAGAACGCACTCATGCTTGACACCCAGTACAGAATG
Seq A exon
CAAGAAGACATTTGTGCATTTCCATCTAATGAGTTCTATGGGGGGAGATTACAAACTGGAATACCAGCCAAATCAAAACTATTCCTTACTCAAACAAAGCAAACCTGCATCGTTTTTGGTCATGTTGAAGGAAAGGAGAAAAGTCTGGTGGTTCGAACTGAACAAGGCAATGAAAACTCAAAGGCAAATATGGAAGAGGCAGAGGAAGTG
Seq C2 exon
GTGCGGGTCGCCATTCTTTTGACTGAGGCTGGGATCAAGACAAAGGACATTGCCATTCTCACACCATATAATGCTCAAGTGGCCAAAATTAGTGAGTCTCTGCATAATAACCATATACGAGACATCACCGTCAACACCATCATGAGGAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016527-'18-19,'18-18,19-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.214 C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=PD(6.7=35.6),PF130871=AAA_12=PU(10.3=46.7)
A:
PF130871=AAA_12=FE(34.0=100)
C2:
PF130871=AAA_12=FE(25.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTCCTTCTTGGCGATCACA
R:
CTCCTCATGATGGTGTTGACGG
Band lengths:
284-494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]