GgaEX0008799 @ galGal3
Exon Skipping
Gene
ENSGALG00000006184 | CERS5
Description
NA
Coordinates
chrE22C19W28_E50C23:252825-253959:+
Coord C1 exon
chrE22C19W28_E50C23:252825-252955
Coord A exon
chrE22C19W28_E50C23:253522-253579
Coord C2 exon
chrE22C19W28_E50C23:253902-253959
Length
58 bp
Sequences
Splice sites
3' ss Seq
CTGGTTTCTTTCCTTTCCAGTAA
3' ss Score
9.72
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
TCTCCAGATGGAAAAAGGTTAGAAGGCTTGTCAAAGCAGCTAGACTGGGATGTTCGAAAGATCCAGCGCTGGTTTCGGCATCGGAGGAACCAGGACAAACCCACCACCATCACTAAATTTTGTGAGAGCAT
Seq A exon
TAATTTTCTTCATATTAATTCTTCCCCCAGTATGATTTTGCCTACTTAAAGCCACAAG
Seq C2 exon
GTGGAGATTTACGTTCTATTTAAGTATATTTCTTTATGGAATCAGGTTTCTCTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006184-'5-5,'5-3,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(63.5=75.0),PF0379811=TRAM_LAG1_CLN8=PU(2.6=11.4)
A:
NO
C2:
PF0379811=TRAM_LAG1_CLN8=FE(9.8=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCGAAAGATCCAGCGCTG
R:
CGTCCAGAGAAACCTGATTCCA
Band lengths:
139-197
Functional annotations
There are 0 annotated functions for this event