GgaINT0000975 @ galGal3
Intron Retention
Gene
ENSGALG00000006184 | CERS5
Description
NA
Coordinates
chrE22C19W28_E50C23:252825-253959:+
Coord C1 exon
chrE22C19W28_E50C23:252825-252955
Coord A exon
chrE22C19W28_E50C23:252956-253901
Coord C2 exon
chrE22C19W28_E50C23:253902-253959
Length
946 bp
Sequences
Splice sites
5' ss Seq
CATGTATGT
5' ss Score
5.71
3' ss Seq
TATTTTGCTTCTTTTTCCAGGTG
3' ss Score
11.81
Exon sequences
Seq C1 exon
TCTCCAGATGGAAAAAGGTTAGAAGGCTTGTCAAAGCAGCTAGACTGGGATGTTCGAAAGATCCAGCGCTGGTTTCGGCATCGGAGGAACCAGGACAAACCCACCACCATCACTAAATTTTGTGAGAGCAT
Seq A exon
GTATGTTCGTGCAGGGGCTGGGATGTGCCTCCATCTGAGAGCTCCAGCTCTTTGTTCTCTCTTCTCACTGAAATTCTGGACAGCTGTTAACTTAAACTGGTGCCTGGGGGTTGGCTGGCGGGAGGGAAATTCTCCTGTAGGTGAGCAGAAGTGAGGAGAGCTTCTTAGAATCCAGCATTCTACAGTGTTTAGTATATGTGCATGAAAGCCCAGAACACTTGCACTGGAGTTATTCTTGGCAGTGATGTACAGCTTGTGAGAGTGAGCCATGGCCATAACGCAGACAGTGACACTTCAGTGTGCGTGTACACATTTGCATGTGCACAATTCAGTAATTACACTGAAGACAAGTTGGCTGTCTGCACAGTTGTGCTGTAGTATTATTCCCAGGCACAGTGATGTATGTACTTCTACAGACACTTCCTGTATTTCTCTGCTTTTCCCTTCAGTTCATTCTTTTGTTCTTTGTTTCTTTCTTAGTGCTTGTAGTTCCCCTGTTAGTGCAGTAGCATCTGAGTGCTTTTTTCCTGACTTATTTCTTCTGTGCTGGTTTCTTTCCTTTCCAGTAATTTTCTTCATATTAATTCTTCCCCCAGTATGATTTTGCCTACTTAAAGCCACAAGGTAAGAAGGATAAATACATGTATTAGGATACCTTCTGGATGACAGCTACTTTTCTTGTTGTTATCTTGACATTGTATATTAAAGCATATGAATGTTGCATGCTCACTCTGAATTTGGCTGTCAATGCAAACGAGTGTGGTGTGAAAACCCTCAAATGGGTTTATCCTCACACAGAATGTTTACAAATGAAGGATTAACAATTAGTGGGTGAATGCTTTTCAGGTGTCAGAATTACTTTTTTCACAGTTGTTTCAGGTTTTGTTACAAATGTTAAACAGAAGCTATTTCTGGTTCATGTTTTGTATTTTGCTTCTTTTTCCAG
Seq C2 exon
GTGGAGATTTACGTTCTATTTAAGTATATTTCTTTATGGAATCAGGTTTCTCTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006184:ENSGALT00000009980:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(63.5=75.0),PF0379811=TRAM_LAG1_CLN8=PU(2.6=11.4)
A:
NA
C2:
PF0379811=TRAM_LAG1_CLN8=FE(9.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGATGGAAAAAGGTTAGAAGGC
R:
CGTCCAGAGAAACCTGATTCCA
Band lengths:
187-1133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]