RnoINT0034892 @ rn6
Intron Retention
Gene
ENSRNOG00000052990 | Cers5
Description
ceramide synthase 5 [Source:RGD Symbol;Acc:1311597]
Coordinates
chr7:141397229-141398477:-
Coord C1 exon
chr7:141398347-141398477
Coord A exon
chr7:141397287-141398346
Coord C2 exon
chr7:141397229-141397286
Length
1060 bp
Sequences
Splice sites
5' ss Seq
CATGTATGT
5' ss Score
5.71
3' ss Seq
TCTATTCTTTGCTCATCCAGGTG
3' ss Score
9.65
Exon sequences
Seq C1 exon
TATCCTGATGAGAAAAGGCTGAAGGGCCTATCAAAGCAACTGGACTGGGATGTTCGAAAAATCCAATGCTGGTTTCGCCATCGGAGAAATCAGGACAAGCCTCCAACGCTCACTAAGTTCTGTGAGAGCAT
Seq A exon
GTATGTGTCAGTGGGGACAGAGAACGAGAAGGGTGGGATACAACTGTTCTCTTTTGGGAAATCAGTTTACTATTAGGATAACAATGTCTGACTCTAATGCTCAGGGGTAATGGAAGTGGAGCTTACGTCCTAGTGCTTCTCAGCTAGAGCTCCTCAGTGAGCCAAGAGCAGCAGTGAGAAAGGGCGAACCTGGAAGCCTGCTCACTCACATGTATTTACTCCCCTGCTTGTCCCTGCCACTAAGGCAAGATGATTCCCTTCTGTTCCTTCTTGGCAAGTAGATGGAACTTTAATCCCCAGCATTTGGAGGCTGGCATTGGCTCTCCAGTTCAAGACCAGCCTGGTCTATATATCCAAATTCCAGGCCAGCCATGATTACATAGTGAAACCCGTCTGCCTACCCTTTTTTATTTAAAGTGACCTGGAGAGTTGGCTCAGTAGTTAAGTGCGCTTAATACACTAACAGAGGGTGAAAGCTTCCTTCCTTCCCCACATCAGGGAGCTCCTAACAACCCTCTGTAACTCCAAGTCCAGGAGATCTGAAGCCTCTCGTCTCCTTGGGTACCTGCCCTCAGACACACACACACACACATACACACACACACACACACACACACACACACACACACACCAACTCCTGCATTTAAAAGTTAATGATACAATATATCTGTTTTTAAAAAGCCTGGGAGTGAGTTCCATTGAGTGCATTTAGATAGGTGGGCATGTATACCCTGCCCACTGTGACAGAATAGTGCCAGCTCGCTCTATATTTAAACTTTGTGGGAAGTTTTCCTTTGCTGAAGAATGCTGTACCTGAAATCAGAGATTTAATTCTCTCAAAATGGCTATTAGTCACTGCCGTGCAATTTAAAAACTGGGAACTGTGAAGGGTCTAATAGGCGAGTGTATTCTTGTGGGACTCTATTCTAAACAGAGGCTCAAAGCTGATGCTGGCTTTCTAGAGGACAGTTGTCCTAGTATACTGTCTTTATTTTCCCTAGCTGGAGTTTCCCCCCTTTGGAGTAGACATTTAAGTAACCTCTATTCTTTGCTCATCCAG
Seq C2 exon
GTGGAGATTCACTTTCTATTTTTGTATCTTCTGCTACGGAGTCAGATTTCTCTGGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052990:ENSRNOT00000080109:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(61.1=75.0),PF0379811=TRAM_LAG1_CLN8=PU(2.6=11.4)
A:
NA
C2:
PF0379811=TRAM_LAG1_CLN8=FE(9.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGAGAAAAGGCTGAAGGGC
R:
CGACCAGAGAAATCTGACTCCG
Band lengths:
184-1244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]