GgaEX0009423 @ galGal3
Exon Skipping
Gene
ENSGALG00000006606 | KIAA1324L
Description
NA
Coordinates
chr1:8107555-8116047:+
Coord C1 exon
chr1:8107555-8107744
Coord A exon
chr1:8114643-8114739
Coord C2 exon
chr1:8115946-8116047
Length
97 bp
Sequences
Splice sites
3' ss Seq
TTCGTTTTCCTAAATTTTAGGAG
3' ss Score
8.87
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GGTAAAAAGATGGCTATTTGCACTGACAATATCACAGATGTTACCCTGAAGGACATGGTTGCAGAATCAGAAGATTTTTCCAACTTTGTGGGAGCTTTTGTCTGTCAGTCCACCATCATCCCATCAGACAGCAAGGGCTTCCGAACAGCCCTGGCTCTTCAGTCCAATAGCCTTGCTGACAGGTTCTTAG
Seq A exon
GAGCTACTGTTGAAACAATGCTGGAAAATATCAGTGTCAAGACAGACATGTTCCCTCCCTCTCCAAGCAAAATACCTGATGTGCATTTCTTTTACAA
Seq C2 exon
GTCTTCAACAGCAACAACCTCTTGTGAAGATGGTCGTGCAACTGTTGTGACAATGAGATGCAACCCCAACAAGCCAGATCAAGGAGAGCTTTCTGTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006606-'18-19,'18-18,19-19
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAGTCCACCATCATCCCA
R:
TGATCTGGCTTGTTGGGGTTG
Band lengths:
169-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]