GgaEX0009805 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr5:17203583-17245524:-
Coord C1 exon
chr5:17245455-17245524
Coord A exon
chr5:17215244-17215355
Coord C2 exon
chr5:17203583-17203773
Length
112 bp
Sequences
Splice sites
3' ss Seq
TTATCTTCATCCATCCACAGGCT
3' ss Score
9.73
5' ss Seq
CAGGTTGGG
5' ss Score
5.26
Exon sequences
Seq C1 exon
GATTTGCCAGCTCCCACATGCCAGTGAGGATCGTGCTCTGGCTCTTCGGAGAAGTCAGCGCTCTGAGCAG
Seq A exon
GCTGCTGGGCTGCTCCTCCCCTGGTGTCTGAGTCCTGGACCTCAAAGTGGCTGTGGAAAACCTTCTCAAGAAGAGATGGCATGAGGAGGAGGAGCTGCGCAAGCACTCTCAG
Seq C2 exon
TGAGCCTTCAGCAGGAACCAGCCCTTGTCCAGATAGAAGTGCAACAGGGCTGCCCAGGGCTGAGCCGTGGTGAATGCATGACCAGGAATCATCGCAGCCGGAGACGGAGGGCTTACTGCTGGTTAGATGCCCAAAAGGGACAGCACAACTCTGGCTGAACTGATGCATCTCGGCACCTGATACAGGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006897-'1-3,'1-2,3-3
Average complexity
S
Mappability confidence:
86%=100=75%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCACATGCCAGTGAGGATC
R:
CTGTATCAGGTGCCGAGATGC
Band lengths:
244-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]