GgaEX0009805 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NDV6]
Coordinates
chr5:15432339-15465002:-
Coord C1 exon
chr5:15464933-15465002
Coord A exon
chr5:15439667-15439778
Coord C2 exon
chr5:15432339-15432529
Length
112 bp
Sequences
Splice sites
3' ss Seq
TTATCTTCATCCATCCACAGGCT
3' ss Score
9.73
5' ss Seq
CAGGTTGGG
5' ss Score
5.26
Exon sequences
Seq C1 exon
GATTTGCCAGCTCCCACATGCCAGTGAGGATCGTGCTCTGGCTCTTCGGAGAAGTCAGCGCTCTGAGCAG
Seq A exon
GCTGCTGGGCTGCTCCTCCCCTGGTGTCTGAGTCCTGGACCTCAAAGTGGCTGTGGAAAACCTTCTCAAGAAGAGATGGCATGAGGAGGAGGAGCTGCGCAAGCACTCTCAG
Seq C2 exon
TGAGCCTTCAGCAGGAACCAGCCCTTGTCCAGACAGAAGTGCAACAGGGCTGCCCAGGGCTGAGCCGTGGTGAATGCATGACCAGGAATCATCGCAGCCTGAGACGGAGGGCTTACTGCTGGTTAGATGCCCAAAAGGGACAGCACAACTCTGGCTGAACTGATGCATCTCGGCACCTGATACAGGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006897_MULTIEX2-3/7=C1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCACATGCCAGTGAGGATC
R:
CTGTATCAGGTGCCGAGATGC
Band lengths:
244-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]