GgaEX0009806 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NDV6]
Coordinates
chr5:15432339-15465002:-
Coord C1 exon
chr5:15464933-15465002
Coord A exon
chr5:15458442-15458533
Coord C2 exon
chr5:15432339-15432529
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTGTCTGCTCTTCTCCTCAGCCC
3' ss Score
9.01
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GATTTGCCAGCTCCCACATGCCAGTGAGGATCGTGCTCTGGCTCTTCGGAGAAGTCAGCGCTCTGAGCAG
Seq A exon
CCCTGTATTTATCGCACATGCCTGGCTTCTCGTCTTCCCACCTAGGAAGAGACACCAGGGGACGGGGATGCTGTAAATCCAGTCTCATGCAG
Seq C2 exon
TGAGCCTTCAGCAGGAACCAGCCCTTGTCCAGACAGAAGTGCAACAGGGCTGCCCAGGGCTGAGCCGTGGTGAATGCATGACCAGGAATCATCGCAGCCTGAGACGGAGGGCTTACTGCTGGTTAGATGCCCAAAAGGGACAGCACAACTCTGGCTGAACTGATGCATCTCGGCACCTGATACAGGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006897_MULTIEX2-1/7=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATGCCAGTGAGGATCGTG
R:
CAGTAAGCCCTCCGTCTCAGG
Band lengths:
174-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]