GgaEX0009859 @ galGal3
Exon Skipping
Gene
ENSGALG00000006929 | ZNF711
Description
NA
Coordinates
chr4:8750995-8758031:-
Coord C1 exon
chr4:8757501-8758031
Coord A exon
chr4:8754525-8754945
Coord C2 exon
chr4:8750995-8751153
Length
421 bp
Sequences
Splice sites
3' ss Seq
TACCCTTTTTTGTTTTTCAGGTT
3' ss Score
12.67
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
TGGAGATCATATTGTTGTGTCGGTCCCTGAAGCTGTCCTTGTTTCTGATGTTGTTACTGATGATGGAATAACTCTTGACCATGGCTTAGCAGCTGAAGTTGTGCAAGGACCTGACATCATCACTGAAACTGATGTTGTAACAGAGGGTGTCATTGTTCCTGATTCTGTTCTGGAAACTGATGTGGCTATTGAAGAAGCACTAGATACCAGTGATCATGTTCTGACTTCTGATCTAATAACAGAAGCTGTTAGAGTTCCTGATCAGGTGTTTGTGGCTGACCTTGTTACGGGTCCTGATGGACATTTAGAGCACGTGGTGCAAGACTCCGTGTCAGCAGCTGACTCACCTACAATGGTCTCGGAAGAAGTCCTTGTAACGAACTCAGATTCTGAAGCAGTCGTTCAGGCAGCTGGTACTGTTCCTGGCTCTACAGTGACTATAAAAACAGAAGATGATGATGACGGCAAGAGTACATCTGAAGACTACTTAATGATATCTT
Seq A exon
GTTTGCGATATTCAGACCCACAGGGGATTGCCAGCTCCCGACCCGAGCGTTGGCCCTGCATGCACTATGTTGGTGACCTCATACCCACCAAAGAACAACTCTGGAGCTGGCCTTTAGGGGTAAGGTACTGTCACCGCCGCCTCCTTTTTAGTGTATTGCAGTACAGTGTTAAGTAGTTTGCTGAACATTTTAGTATTAGTGCTCCTATACTGTGACCAACGGGATATAAAATAAGTATATCAGACATTGGAAAAATATGAAAAATTGTAAAACCACTGGACTTACCTTGCCCTCGTGTTATTCCTATGGGCTCCTATGGTGGGTGTGATATCACCAGCATAGTGCATGCTGAGGCATCACGTGAACCTGGAGCTGGCAATCCACGGTGAATCTGGACATCACACACCTGAAAACAGCTAAG
Seq C2 exon
TGGATGATGTTGGAGAAAAACTGGACCACATAGGAAGCACTCCCTTGAAAATCAGTACTGAGGTGACAAATGATGAAGTGGCTAAAGATGATGGGTTTGGTTCCGAAGTTATCAAAGTATACATATTTAAAGCTGAAGCTGAAGATGATGTTGAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006929-'2-4,'2-3,7-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.000 C2=0.407
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=PU(56.7=78.7)
A:
PF047048=Zfx_Zfy_act=PD(4.1=10.2)
C2:
PF047048=Zfx_Zfy_act=FE(21.5=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGTTTGTGGCTGACCTTG
R:
ACTTCGGAACCAAACCCATCA
Band lengths:
346-767
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]