GgaEX0009859 @ galGal4
Exon Skipping
Gene
ENSGALG00000006929 | ZNF6
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NHJ7]
Coordinates
chr4:8666120-8673156:-
Coord C1 exon
chr4:8672626-8673156
Coord A exon
chr4:8669952-8670070
Coord C2 exon
chr4:8666120-8666278
Length
119 bp
Sequences
Splice sites
3' ss Seq
TACCCTTTTTTGTTTTTCAGGTT
3' ss Score
12.67
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
TGGAGATCATATTGTTGTGTCGGTCCCTGAAGCTGTCCTTGTTTCTGATGTTGTTACTGATGATGGAATAACTCTTGACCATGGCTTAGCAGCTGAAGTTGTGCAAGGACCTGACATCATCACTGAAACTGATGTTGTAACAGAGGGTGTCATTGTTCCTGATTCTGTTCTGGAAACTGATGTGGCTATTGAAGAAGCACTAGATACCAGTGATCATGTTCTGACTTCTGATCTAATAACAGAAGCTGTTAGAGTTCCTGATCAGGTGTTTGTGGCTGACCTTGTTACGGGTCCTGATGGACATTTAGAGCACGTGGTGCAAGACTCCGTGTCAGCAGCTGACTCACCTACAATGGTCTCGGAAGAAGTCCTTGTAACGAACTCAGATTCTGAAGCAGTCGTTCAGGCAGCTGGTACTGTTCCTGGCTCTACAGTGACTATAAAAACAGAAGATGATGATGACGGCAAGAGTACATCTGAAGACTACTTAATGATATCTT
Seq A exon
GTTTGCGATATTCAGACCCACAGGGGATTGCCAGCTCCCGACCCGAGCGTTGGCCCTGCATGCACTATGTTGGTGACCTCATACCCACCAAAGAACAACTCTGGAGCTGGCCTTTAGGG
Seq C2 exon
TGGATGATGTTGGAGAAAAACTGGACCACATAGGAAGCACTCCCTTGAAAATCAGTACTGAGGTGACAAATGATGAAGTGGCTAAAGATGATGGGTTTGGTTCCGAAGTTATCAAAGTATACATATTTAAAGCTGAAGCTGAAGATGATGTTGAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006929_MULTIEX2-2/3=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.299 A=0.000 C2=0.219
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=PU(41.8=78.7)
A:
PF047048=Zfx_Zfy_act=PD(4.1=15.0)
C2:
PF047048=Zfx_Zfy_act=FE(15.8=100)
Main Inclusion Isoform:
ENSGALT00000011226fB1082
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACATTTAGAGCACGTGGTG
R:
AGGGAGTGCTTCCTATGTGGT
Band lengths:
248-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]