GgaEX1066390 @ galGal4
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr4:8666120-8673156:-
Coord C1 exon
chr4:8672626-8673156
Coord A exon
chr4:8669650-8669733
Coord C2 exon
chr4:8666120-8666278
Length
84 bp
Sequences
Splice sites
3' ss Seq
GGTGGGTGTGATATCACCAGCAT
3' ss Score
1.7
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
TGGAGATCATATTGTTGTGTCGGTCCCTGAAGCTGTCCTTGTTTCTGATGTTGTTACTGATGATGGAATAACTCTTGACCATGGCTTAGCAGCTGAAGTTGTGCAAGGACCTGACATCATCACTGAAACTGATGTTGTAACAGAGGGTGTCATTGTTCCTGATTCTGTTCTGGAAACTGATGTGGCTATTGAAGAAGCACTAGATACCAGTGATCATGTTCTGACTTCTGATCTAATAACAGAAGCTGTTAGAGTTCCTGATCAGGTGTTTGTGGCTGACCTTGTTACGGGTCCTGATGGACATTTAGAGCACGTGGTGCAAGACTCCGTGTCAGCAGCTGACTCACCTACAATGGTCTCGGAAGAAGTCCTTGTAACGAACTCAGATTCTGAAGCAGTCGTTCAGGCAGCTGGTACTGTTCCTGGCTCTACAGTGACTATAAAAACAGAAGATGATGATGACGGCAAGAGTACATCTGAAGACTACTTAATGATATCTT
Seq A exon
CATAGTGCATGCTGAGGCATCACGTGAACCTGGAGCTGGCAATCCACGGTGAATCTGGACATCACACACCTGAAAACAGCTAAG
Seq C2 exon
TGGATGATGTTGGAGAAAAACTGGACCACATAGGAAGCACTCCCTTGAAAATCAGTACTGAGGTGACAAATGATGAAGTGGCTAAAGATGATGGGTTTGGTTCCGAAGTTATCAAAGTATACATATTTAAAGCTGAAGCTGAAGATGATGTTGAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006929_MULTIEX2-3/3=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.299 A=0.000 C2=0.219
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGAAGCAGTCGTTCAGGC
R:
TGATTTTCAAGGGAGTGCTTCCT
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]