GgaEX0010746 @ galGal3
Exon Skipping
Gene
ENSGALG00000007559 | E1BZW8_CHICK
Description
NA
Coordinates
chr2:16016997-16025039:-
Coord C1 exon
chr2:16024909-16025039
Coord A exon
chr2:16018627-16018724
Coord C2 exon
chr2:16016997-16017138
Length
98 bp
Sequences
Splice sites
3' ss Seq
CCTTTACTGCTACTTCCCAGGAG
3' ss Score
6.17
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GAGTTACTTGTATCTACTGCTGAACTTAGGGAAATGTGTGAATATTACTTTGATGGGAAAGGAAAGGCCTTTCGACCAATGATTGTGGTGCTAATGGCGAGGGCTTGCAACATTCACCATAGCAATTCCAG
Seq A exon
GAGGAAGTCCAGTCTGCTGACATAATTAATGAAAAAGGGAGTCCCCAAAAGGAGACCCGTGCATGAAAGAGGCTGGAGACTTTTACAGTTGTTTGAAG
Seq C2 exon
GGAGGTGCAAGCAAGCCAGCGCTCTGTGGCCATAATTGCAGAGATGATCCACACGGCTAGCCTCGTTCATGACGATGTTATTGATGATGCAAATTCTCGCAGAGGAAAAATGACAGTCAATCAGATCTGGGGAGAGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007559-'4-7,'4-6,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034812=polyprenyl_synt=PU(13.7=81.8),PF073076=HEPPP_synt_1=PU(5.3=15.9)
A:
PF0034812=polyprenyl_synt=PD(14.0=66.7)
C2:
PF0034812=polyprenyl_synt=FE(17.9=100),PF073076=HEPPP_synt_1=FE(35.3=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCTTGCAACATTCACCAT
R:
CTTCCTCTCTCCCCAGATCTGA
Band lengths:
174-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]