GgaEX0010746 @ galGal4
Exon Skipping
Gene
ENSGALG00000007559 | PDSS1
Description
prenyl (decaprenyl) diphosphate synthase, subunit 1 [Source:HGNC Symbol;Acc:HGNC:17759]
Coordinates
chr2:15989433-15997475:-
Coord C1 exon
chr2:15997345-15997475
Coord A exon
chr2:15991063-15991160
Coord C2 exon
chr2:15989433-15989574
Length
98 bp
Sequences
Splice sites
3' ss Seq
CCTTTACTGCTACTTCCCAGGAG
3' ss Score
6.17
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GAGTTACTTGTATCTACTGCTGAACTTAGGGAAATGTGTGAATATTACTTTGATGGGAAAGGAAAGGCCTTTCGACCAATGATTGTGGTGCTAATGGCGAGGGCTTGCAACATTCACCATAGCAATTCCAG
Seq A exon
GAGGAAGTCCAGTCTGCTGACATAATTAATGAAAAAGGGAGTCCCCAAAAGGAGACCCGTGCATGAAAGAGGCTGGAGACTTTTACAGTTGTTTGAAG
Seq C2 exon
GGAGGTGCAAGCAAGCCAGCGCTCTGTGGCCATAATTGCAGAGATGATCCACACGGCTAGCCTCGTTCATGACGATGTTATTGATGATGCAAATTCTCGCAGAGGAAAAATGACAGTCAATCAGATCTGGGGAGAGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007559_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034812=polyprenyl_synt=PU(13.7=81.8),PF073076=HEPPP_synt_1=PU(5.3=15.9)
A:
NO
C2:
PF0034812=polyprenyl_synt=FE(17.9=100),PF073076=HEPPP_synt_1=FE(35.3=100)
Main Inclusion Isoform:
ENSGALT00000012224fB1204
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCTTGCAACATTCACCAT
R:
CTTCCTCTCTCCCCAGATCTGA
Band lengths:
174-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]