GgaEX0011545 @ galGal4
Exon Skipping
Gene
ENSGALG00000008053 | PRDM11
Description
PR domain containing 11 [Source:HGNC Symbol;Acc:HGNC:13996]
Coordinates
chr5:21583440-21598829:+
Coord C1 exon
chr5:21583440-21583507
Coord A exon
chr5:21586207-21586262
Coord C2 exon
chr5:21598642-21598829
Length
56 bp
Sequences
Splice sites
3' ss Seq
CTTACATGTGACTATCTCAGTTC
3' ss Score
5.74
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
ATAGTTGACAAGAACAACCGCTACAAATCCATCGATGGGACAGATGAAACCAAAGCAAACTGGATGAG
Seq A exon
TTCTCAGGTTTCTGGCACAGCTCAAATTCCTCCTCTCCCTCAGCCCCTGTGAAAAG
Seq C2 exon
GTACGTGATCATATCCCGGGAGGAGAGGGAGCAGAACCTGATGGCCTTCCAGCACAGTGAAAGGATTTACTTCCGTGCCTGTCGTGACATCCGGCCTGGGGAGAAGCTGCGGGTCTGGTACAGTGAGGATTACATGAAGCGGCTGCATAGCATGTCCCAGGAGACCATTAACAGAAATCTCACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008053_MULTIEX1-2/5=C1-C2
Average complexity
ME(2-5[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.304 A=1.000 C2=0.115
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(22.4=100)
A:
NO
C2:
PF0085623=SET=PD(41.8=64.1)
Main Inclusion Isoform:
ENSGALT00000013067fB1285
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACCGCTACAAATCCATCGA
R:
GATGTCACGACAGGCACGGAA
Band lengths:
146-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]