GgaEX1045885 @ galGal4
Exon Skipping
Gene
ENSGALG00000008053 | PRDM11
Description
PR domain containing 11 [Source:HGNC Symbol;Acc:HGNC:13996]
Coordinates
chr5:21583440-21598829:+
Coord C1 exon
chr5:21583440-21583507
Coord A exon
chr5:21590057-21590469
Coord C2 exon
chr5:21598642-21598829
Length
413 bp
Sequences
Splice sites
3' ss Seq
TGTGGGATGTTCAACTCAAGGAA
3' ss Score
3.43
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATAGTTGACAAGAACAACCGCTACAAATCCATCGATGGGACAGATGAAACCAAAGCAAACTGGATGAG
Seq A exon
GAACATGGCTGAACGAAAGAGGAAGCCCAAGTTTTCCAAGGAAGAACTGGACATTCTGGTCACTGAGGTGACCCGAAATGAAGCCATGCTGTTTGGGAGGCAGACGGTGCGTCTGTCTCATGCTGACAGGGACAAGATCTGGGAAGACATAGCCAGACAGATCACATCAGTCAGCCAGGTCCCCAGGTCTGTAAAAGACATTAAACACAGATGGGACGACATGAAGAGAAGGACCAAGGACAAACTGGCATTCATGCAGAGATCCCTTTCTAGCCCCAGCAGCAAGGGGCGGCCCTCGGCCATCGTCCTGACCGCCCATGAGAGAGCTATCGAGTCAACGCTGCATTCATCACACCACGTACACAGCTTCCGGAGAGCAGATCTGGATGTGGTTGACAGCCCGTCAACAAGCT
Seq C2 exon
GTACGTGATCATATCCCGGGAGGAGAGGGAGCAGAACCTGATGGCCTTCCAGCACAGTGAAAGGATTTACTTCCGTGCCTGTCGTGACATCCGGCCTGGGGAGAAGCTGCGGGTCTGGTACAGTGAGGATTACATGAAGCGGCTGCATAGCATGTCCCAGGAGACCATTAACAGAAATCTCACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008053_MULTIEX1-3/5=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.304 A=0.281 C2=0.115
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(22.4=100)
A:
PF138731=Myb_DNA-bind_5=WD(100=56.1)
C2:
PF0085623=SET=PD(41.8=64.1)
Main Inclusion Isoform:
ENSGALT00000013067fB10913
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGACAAGAACAACCGCTACA
R:
CTGTTGTGAGATTTCTGTTAATGGT
Band lengths:
254-667
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]