RnoEX0069322 @ rn6
Exon Skipping
Gene
ENSRNOG00000008674 | Prdm11
Description
PR/SET domain 11 [Source:RGD Symbol;Acc:1597330]
Coordinates
chr3:81877743-81890776:-
Coord C1 exon
chr3:81890709-81890776
Coord A exon
chr3:81886446-81886729
Coord C2 exon
chr3:81877743-81877930
Length
284 bp
Sequences
Splice sites
3' ss Seq
CGGCTGTCCCATGCCGACAGGGA
3' ss Score
7
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
ATTGTGGACAAGAACAACCGCTACAAGTCCATAGATGGGTCAGATGAGACCAAGGCCAACTGGATGAG
Seq A exon
GGACAAGATTTGGGAAGGCATAGCTCGGAAAGTCACCTCCGTCAGCCAGGTTCCCCGCTCCATCAAGGATATTAAACACAGATGGGATGACATGAAGCGCAGGACCAAGGACAAGCTGGCCTTCATGCGGCAGTCACTGTCGGGCCCAGGGATCGGGGGCCACGCCCATCCCATCATGCTTGCTGCCCACAAGAGAGCTATCAAGTCAGCACTGCTCACTGCCAGGGCTGGGCACAGCTTCCCCAGGGCAGAGCTCGATGGAACCGACAGCCCTAACACCAGCT
Seq C2 exon
GTACGTGGTCATTTCCCGGGAGGAGAGGGAGCAGAACCTCCTGGCCTTCCAGCACAGCGAGCGCATCTACTTCCGGGCATGCCGAGACATCCGGCCAGGAGAGCGGCTGCGGGTCTGGTACAGCGAGGACTACATGAAGCGTCTGCACAGCATGTCCCAGGAAACCATCCACCGCAACCTGGCCCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008674-'6-9,'6-8,7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=0.417 C2=0.477
Domain overlap (PFAM):
C1:
PF138731=Myb_DNA-bind_5=PU(33.3=91.3)
A:
PF138731=Myb_DNA-bind_5=PD(65.1=42.7)
C2:
PF0085623=SET=PD(43.6=64.1)
Main Inclusion Isoform:
ENSRNOT00000066526fB11278
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTGGACAAGAACAACCGCT
R:
GGCCAGGTTGCGGTGGAT
Band lengths:
252-536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]