BtaEX0028351 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006443 | PRDM11
Description
PR domain containing 11 [Source:HGNC Symbol;Acc:HGNC:13996]
Coordinates
chr15:76124081-76139502:+
Coord C1 exon
chr15:76124081-76124148
Coord A exon
chr15:76128096-76128517
Coord C2 exon
chr15:76139315-76139502
Length
422 bp
Sequences
Splice sites
3' ss Seq
TGTGGGATATTCAACCCAAGGAA
3' ss Score
2.42
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
ATTGTGGACAAAAACAACCGCTACAAGTCCATAGATGGGTCAGATGAGACTAAAGCCAACTGGATGAG
Seq A exon
GAACGTGGCGCCCCTGGCCGAGCGTAAGAGGAAGCCCAAGTTCTCCAAGGAGGAGCTGGACATTCTGGTCACCGAGGTGACCCACCACGAAGCGGTTCTCTTTGGGAGGGAGACCATGCGGCTGTCCCATGCCGACAGGGACAAGATTTGGGAAGGCATAGCTCGGAAAATCACCTCCGTCAGCCAGGTTCCACGCTCCGTCAAGGACATTAAACACAGATGGGATGACATGAAACGGAGGACCAAGGACAAGCTGGCCTTCATGCAGCAGTCCCTGTCGGGCCCCGGAGCCGGGGGCCGAGCCCCTGCTATCGTGCTCACTGCCCACGAGAGGGCAATCGAGTCGGCACTGCTAACGGCCCGGTCCGGGCACGGCTTCCCCAGGGTGGAACTTGACGGCACGGACAGCCCTTCCACCAGCT
Seq C2 exon
GTACGTGGTCATCTCCCGGGAGGAGAGGGAGCAGAACCTGCTGGCCTTCCAGCACAGCGAGCGCATCTACTTCCGGGCCTGCCGGGACATCCGGCCGGGGGAGCGGCTGCGCGTCTGGTACAGCGAGGACTACATGAAGCGCCTGCACAGCATGTCCCAGGAGACCATCCACCGCAACCTGGCCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006443_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=0.423 C2=0.477
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(23.4=100)
A:
PF138731=Myb_DNA-bind_5=WD(100=54.9)
C2:
PF0085623=SET=PD(43.6=64.1)
Main Inclusion Isoform:
ENSBTAT00000008450fB5466
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGGACAAAAACAACCGCT
R:
CAGGTTGCGGTGGATGGTC
Band lengths:
248-670
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development