MmuEX0036943 @ mm10
Exon Skipping
Gene
ENSMUSG00000075028 | Prdm11
Description
PR domain containing 11 [Source:MGI Symbol;Acc:MGI:2685553]
Coordinates
chr2:92980511-92993431:-
Coord C1 exon
chr2:92993364-92993431
Coord A exon
chr2:92989232-92989653
Coord C2 exon
chr2:92980511-92980698
Length
422 bp
Sequences
Splice sites
3' ss Seq
TGTGGGATATTCAACCCAAGGAA
3' ss Score
2.42
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
ATTGTGGACAAGAACAACCGCTACAAGTCCATAGATGGGTCGGATGAGACCAAGGCCAACTGGATGAG
Seq A exon
GAACGTGCTGCCCCTGGCCGAGCGTAAGAGGAAGCCAAAATTCTCCAAGGAGGAGCTGGACATTCTGGTCACAGAGGTGACCCGTCACGAAGCCGTTCTCTTTGGGAGAGAGACCATGCGGCTGTCCCATGCCGACAGGGACAAGATTTGGGAAGGCATAGCTCGGAAAATCACCTCCGTCAGCCAGGTTCCCCGCTCCATCAAGGACATTAAGCACAGGTGGGATGACATGAAGCGCAGGACCAAGGACAAGCTGGCTTTCATGCGGCAGTCACTGTCGGGCCCAGGGATCGGGGGCCACACCTACCCCATCATGCTCGCTGCCCACGAGAGAGCCATCGAGGCAGCACTGCTCACCACCAGGGCCGGGCATGGCTTCCCCAGGGCAGAGCTGGACGGAACCGACAGCCCGTCTACCAGCT
Seq C2 exon
GTACGTGGTCATTTCCCGGGAGGAGAGGGAGCAGAACCTCCTGGCGTTCCAGCACAGCGAGCGCATCTACTTCCGGGCATGCCGAGACATCCGGCCAGGAGAGCGGCTGCGGGTCTGGTACAGCGAGGACTACATGAAGCGCCTGCATAGCATGTCCCAGGAAACCATCCACCGCAACTTAGCCCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075028_MULTIEX1-1/4=C1-3
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=0.275 C2=0.109
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(23.4=100)
A:
PF138731=Myb_DNA-bind_5=WD(100=54.9)
C2:
PF0085623=SET=PD(43.6=64.1)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGGACAAGAACAACCGCT
R:
CCGGGCTAAGTTGCGGTG
Band lengths:
254-676
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types