HsaEX1029327 @ hg38
Exon Skipping
Gene
ENSG00000019485 | PRDM11
Description
PR/SET domain 11 [Source:HGNC Symbol;Acc:HGNC:13996]
Coordinates
chr11:45204711-45219757:+
Coord C1 exon
chr11:45204711-45204778
Coord A exon
chr11:45208874-45209295
Coord C2 exon
chr11:45219570-45219757
Length
422 bp
Sequences
Splice sites
3' ss Seq
TGTGGGATATTCAACCCAAGGAA
3' ss Score
2.42
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
ATTGTGGACAAGAACAACCGCTATAAGTCCATAGATGGCTCAGACGAGACCAAAGCCAACTGGATGAG
Seq A exon
GAATGTGGCACACCTGGCTGAGCGTAAGAGGAAGCCCAAGTTCTCCAAGGAGGAGCTGGACATTCTTGTCACAGAGGTGACCCACCATGAAGCAGTGCTCTTTGGGAGGGAGACCATGCGGCTGTCCCATGCTGACAGGGACAAGATTTGGGAAGGCATAGCCCGGAAAATCACCTCCGTCAGCCAGGTGCCCCGCTCCGTCAAGGACATTAAGCACAGATGGGATGACATGAAACGGAGGACCAAGGACAAGCTGGCCTTCATGCAGCAGTCCCTGTCGGGCCCTGGGGCCGGGGGCCGGGCCCCCACCATCGTGCTCACGGCCCACGAGAGGGCCATCAAGTCGGCGCTGCTCACGGCCCGTGCAGGGCGCGGCTTCCCCAGGGCGGAACTGGATGGCACCGACAGCCCTTCGACCAGCT
Seq C2 exon
GTACGTGGTCATCTCCCGGGAGGAGAGGGAGCAGAACCTGCTGGCGTTCCAGCACAGTGAGCGCATCTACTTCCGGGCGTGCAGGGACATCCGGCCTGGGGAGTGGCTGCGGGTCTGGTACAGCGAGGACTACATGAAGCGCCTGCACAGCATGTCCCAGGAAACCATTCACCGCAACCTGGCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000019485_MULTIEX1-1/3=C1-3
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=0.397 C2=0.094
Domain overlap (PFAM):
C1:
NO
A:
PF138731=Myb_DNA-bind_5=WD(100=55.3)
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGGACAAGAACAACCGCT
R:
CTCTGGCCAGGTTGCGGT
Band lengths:
255-677
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains