GgaEX0011597 @ galGal4
Exon Skipping
Gene
ENSGALG00000008088 | ACSL4
Description
acyl-CoA synthetase long-chain family member 4 [Source:HGNC Symbol;Acc:HGNC:3571]
Coordinates
chr4:13740515-13743264:+
Coord C1 exon
chr4:13740515-13740561
Coord A exon
chr4:13742747-13742931
Coord C2 exon
chr4:13743025-13743264
Length
185 bp
Sequences
Splice sites
3' ss Seq
GCTCTGGTCTTCACCCACAGGAG
3' ss Score
9.23
5' ss Seq
GAAGTATGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
ATTTAACTGACATCGAATAAAACTTGGACATCGCTGTCAGATACCTT
Seq A exon
GAGTCCACTGCTGGCTCTCAAAGGTTACTAAAATCTTAGCGGCTGCCTTGAAACCGAGCTATCTAAGCTTCACTTACTGTTGCTTCTCCCTACACCATACTGCACTGCTGCTTTTGCTCTTGCCTGGTCAGAACGCACTAAGAGATTTTCTTTTTCAAATACCCACAATGAAACTTAGGCTAGAA
Seq C2 exon
AAGAAAAAGGCTATGGCAAAACGTTTAAAAGCTAAGCCCATCTCGGACAAACCTGGAAGCCCCTACCGCTCCGTCACTCATCTTGACTCACTAGCAAACATAAACATTCCTGGAGCAGACACGTTGGACAAACTGTTTGACCACGCGTTAGCAAAGTTTGGGAAAAAGGACTGTCTTGGGACCAGAGAAATACTGAGTGAAGAAAATGAAATGCAACCAAACGGAAAAGTTTTCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008088_MULTIEX1-2/4=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.066
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0050123=AMP-binding=PU(3.1=19.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAATAAAACTTGGACATCGCTGT
R:
CCGTTTGGTTGCATTTCATTTTCT
Band lengths:
258-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]