GgaEX0011597 @ galGal3
Exon Skipping
Gene
ENSGALG00000008088 | ACSL4
Description
NA
Coordinates
chr4:13883295-13886044:+
Coord C1 exon
chr4:13883295-13883341
Coord A exon
chr4:13885527-13885711
Coord C2 exon
chr4:13885805-13886044
Length
185 bp
Sequences
Splice sites
3' ss Seq
GCTCTGGTCTTCACCCACAGGAG
3' ss Score
9.23
5' ss Seq
GAAGTATGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
ATTTAACTGACATCGAATAAAACTTGGACATCGCTGTCAGATACCTT
Seq A exon
GAGTCCACTGCTGGCTCTCAAAGGTTACTAAAATCTTAGCGGCTGCCTTGAAACCGAGCTATCTAAGCTTCACTTACTGTTGCTTCTCCCTACACCATACTGCACTGCTGCTTTTGCTCTTGCCTGGTCAGAACGCACTAAGAGATTTTCTTTTTCAAATACCCACAATGAAACTTAGGCTAGAA
Seq C2 exon
AAGAAAAAGGCTATGGCAAAACGTTTAAAAGCTAAGCCCATCTCGGACAAACCTGGAAGCCCCTACCGCTCCGTCACTCATCTTGACTCACTAGCAAACATAAACATTCCTGGAGCAGACACGTTGGACAAACTGTTTGACCACGCGTTAGCAAAGTTTGGGAAAAAGGACTGTCTTGGGACCAGAGAAATACTGAGTGAAGAAAATGAAATGCAACCAAACGGAAAAGTTTTCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008088-'3-2,'3-1,4-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.076
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0050123=AMP-binding=PU(3.1=19.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAATAAAACTTGGACATCGCTGT
R:
CCGTTTGGTTGCATTTCATTTTCT
Band lengths:
258-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]