GgaALTA0004220-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000008088 | ACSL4
Description
NA
Coordinates
chr4:13883295-13886044:+
Coord C1 exon
chr4:13883295-13883341
Coord A exon
NA
Coord C2 exon
chr4:13885808-13886044
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
TTCTTACCAACGCTAAGAAGAAA
3' ss Score
-3.58
Exon sequences
Seq C1 exon
ATTTAACTGACATCGAATAAAACTTGGACATCGCTGTCAGATACCTT
Seq A exon
NA
Seq C2 exon
AAAAAGGCTATGGCAAAACGTTTAAAAGCTAAGCCCATCTCGGACAAACCTGGAAGCCCCTACCGCTCCGTCACTCATCTTGACTCACTAGCAAACATAAACATTCCTGGAGCAGACACGTTGGACAAACTGTTTGACCACGCGTTAGCAAAGTTTGGGAAAAAGGACTGTCTTGGGACCAGAGAAATACTGAGTGAAGAAAATGAAATGCAACCAAACGGAAAAGTTTTCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008088-3-3,3-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.076
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0050123=AMP-binding=PU(3.1=19.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAATAAAACTTGGACATCGCTGT
R:
GTAGGGGCTTCCAGGTTTGTC
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]