MmuALTA0001063-3/5 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000031278 | Acsl4
Description
acyl-CoA synthetase long-chain family member 4 [Source:MGI Symbol;Acc:MGI:1354713]
Coordinates
chrX:142351379-142360484:-
Coord C1 exon
chrX:142360387-142360484
Coord A exon
chrX:142351468-142351615
Coord C2 exon
chrX:142351379-142351467
Length
148 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
TTCTTACCAATGCCAAGAAGAAA
3' ss Score
-4.07
Exon sequences
Seq C1 exon
ATTCATGTCCCATGTCACTGTTTTAATAAATGTTGTCTCTCACTGCAGACTCAGATCACAGGAGATACACCTGTTCTTAAAAGTGAAAGAAGAAATCT
Seq A exon
AAAAACGCTATGGCAAAGAGAATAAAAGCTAAGCCCACTTCAGACAAACCTGGAAGTCCATATCGCTCTGTCACACACTTCGACTCACTAGCTGTCATAGACATCCCTGGAGCAGATACTCTGGATAAATTATTTGACCATGCTGTAG
Seq C2 exon
CCAAATTTGGGAAGAAGGACAGCCTTGGAACCCGGGAGATCCTGAGTGAAGAAAATGAAATGCAGCCAAATGGAAAGGTTTTTAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031278-5-10,5-9,5-8,5-7,5-6-3/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.224
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0050123=AMP-binding=PU(3.1=19.7)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCATGTCCCATGTCACTGT
R:
TTCTTAAAAACCTTTCCATTTGGCTG
Band lengths:
186-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types