MmuEX6046221 @ mm10
Exon Skipping
Gene
ENSMUSG00000031278 | Acsl4
Description
acyl-CoA synthetase long-chain family member 4 [Source:MGI Symbol;Acc:MGI:1354713]
Coordinates
chrX:142333670-142360436:-
Coord C1 exon
chrX:142360387-142360436
Coord A exon
chrX:142350960-142351137
Coord C2 exon
chrX:142333670-142333744
Length
178 bp
Sequences
Splice sites
3' ss Seq
AAATATCTCACTCTTAACAGTTA
3' ss Score
6.2
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
ACTCAGATCACAGGAGATACACCTGTTCTTAAAAGTGAAAGAAGAAATCT
Seq A exon
TTAATTCTTGGGAATTATAAATGGATAAACTATCTTGAAGTGAACTGCAGAGTGAATAACTTTGGAAGTGGCCTCACTGCATTGGGACTGAAACCAAAGAACACCATTGCCATTTTCTGTGAGACCAGGGCAGAGTGGATGATTGCAGCACAGACTTGCTTTAAGTACAACTTTCCAC
Seq C2 exon
TTACTGACTACACTACTGGAAGAGTTGGAGCTCCTCTTATTTGCTGTGAAATTAAACTGAAAGACTGGCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031278_MULTIEX1-2/9=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0050123=AMP-binding=FE(12.4=100)
C2:
PF0050123=AMP-binding=FE(5.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAGATCACAGGAGATACACCT
R:
CTTCCTGCCAGTCTTTCAGTT
Band lengths:
125-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types