RnoEX6026657 @ rn6
Exon Skipping
Gene
ENSRNOG00000019180 | Acsl4
Description
acyl-CoA synthetase long-chain family member 4 [Source:RGD Symbol;Acc:69401]
Coordinates
chrX:113623845-113625955:-
Coord C1 exon
chrX:113625716-113625955
Coord A exon
chrX:113625311-113625488
Coord C2 exon
chrX:113623845-113623954
Length
178 bp
Sequences
Splice sites
3' ss Seq
AAACTTCTCCCTCTTAACAGTTA
3' ss Score
8.55
5' ss Seq
CGCGTAAGT
5' ss Score
9.93
Exon sequences
Seq C1 exon
AAGAAAAACGCTATGGCAAAGAGAATAAAAGCTAAGCCCACTTCAGACAAACCCGGAAGTCCATATCGCTCTGTCACGCACTTCGACTCACTAGCTGTCATAGACATCCCTGGAGCAGATACTCTGGATAAATTATTTGACCATGCTGTAGCCAAGTTTGGGAAGAAGGACAGCCTGGGGACCCGGGAGATCCTGAGCGAAGAAAATGAAATGCAGCCAAATGGAAAGGTTTTTAAGAAG
Seq A exon
TTAATTCTTGGGAATTATAAATGGATAAACTATCTTGAAGTGAACTGCCGAGTGAATAACTTTGGAAGTGGCCTCACTGCACTGGGACTGAAACCAAAGAACACCATTGCCATTTTCTGTGAGACCAGGGCGGAGTGGATGATTGCAGCGCAGACCTGCTTTAAGTACAACTTTCCGC
Seq C2 exon
TTGTGACTTTATATGCTACCCTTGGCAAAGAAGCTGTCGTTCATGGATTAAATGAGTCTGAGGCTTCCTATCTGATTACTAGTGTTGAACTTCTGGAAAGCAAACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019180-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.224 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(3.1=19.7)
A:
PF0050123=AMP-binding=FE(12.4=100)
C2:
PF0050123=AMP-binding=FE(7.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCCACTTCAGACAAACCC
R:
GACAGCTTCTTTGCCAAGGGT
Band lengths:
245-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]