GgaEX1006054 @ galGal4
Exon Skipping
Gene
ENSGALG00000008088 | ACSL4
Description
acyl-CoA synthetase long-chain family member 4 [Source:HGNC Symbol;Acc:HGNC:3571]
Coordinates
chr4:13721076-13745121:+
Coord C1 exon
chr4:13721076-13721505
Coord A exon
chr4:13743552-13743729
Coord C2 exon
chr4:13745012-13745121
Length
178 bp
Sequences
Splice sites
3' ss Seq
GTTGCTGCCCCCTCCTCCAGTTA
3' ss Score
8.11
5' ss Seq
CTCGTGAGT
5' ss Score
8.41
Exon sequences
Seq C1 exon
GAGAGAGTGCCCGCAGGGCCCTCGGCTCAGCCCGGCGGTATCCAAGCCCCACATTTCGGCGGGGTGAAGGTCTCGAGCACCCGGCCCTGCCGGCGGCCCGCGCTCCGCCCCGGCCACACAGAAGCGGGGGCCCCGACCCGCGCCCCCCCCTTCCTCCGGGCGGCGCGTCAGCAAGGAGGAGGGCTGCACGGCGGCGCGGGGGCTCGCTCCTCCTCCTCCTCCCGCTTCCCCTCACCGAGCCTTCTCCCCTCCCTCCCGCTCTCAGCCATTTTAGCAGCCGGCCGAGCCGCGCTCTCCGCTAGCAGCGCGGGGCCGAAGCCGGGCGGGCCGAGCTGAGCTGAGCTGAGCTGAGGTGAGCGCACGCGGCGCAGCATAACGGCCGGCGGGGCCGAGGTCGGGCCGCTCCCTGCCCGCTGTCCGGGGGGACGAG
Seq A exon
TTAATCTTAGGAACCTACAGATGGCTGTCCTATGAAGAAGTAAATCAGAAAGTGAATCGCTTGGGGAGCGGACTGATAGCCCTGGGACTAACCCCAAAGAGCACCGTTGTTATCTTTTGCGAGACCCGAGCAGAATGGATGATCGCAGCCCTGGCCTGCTTCAAGTACAACTTTCCTC
Seq C2 exon
TTGTTACCTTGTATGCTACACTGGGTGAAGAGGCAGTAACCTATGGTCTCAATGAATGTGGAGCGTCGTATCTGATCACCAGTGCAGAGCTTCTTGAGAGCAAACTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008088_MULTIEX1-4/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0050123=AMP-binding=FE(12.4=100)
C2:
PF0050123=AMP-binding=FE(7.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCTCTCAGCCATTTTAGCA
R:
ACGACGCTCCACATTCATTGA
Band lengths:
244-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]