BtaEX6006042 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018986 | ACSL4
Description
acyl-CoA synthetase long-chain family member 4 [Source:HGNC Symbol;Acc:HGNC:3571]
Coordinates
chrX:62507047-62508324:-
Coord C1 exon
chrX:62507941-62508324
Coord A exon
chrX:62507526-62507703
Coord C2 exon
chrX:62507047-62507156
Length
178 bp
Sequences
Splice sites
3' ss Seq
AGCATCTCTCACTCTAACAGTTA
3' ss Score
7
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
Exon sequences
Seq C1 exon
AGAAATAAACATCATTTTAGAAGCCTTGCCACCATGAAACTTAAGCAAAGTGTGCTCACCATTATTTTGCTGCCTATCCACCTGTTAATAACAATATACAGTGCCCTTATATTTATTCCATGGTATTTTCTTACCAATGCTAAGAAGAAAAACGCTATGGCAAAGAGAATAAAAGCTAAGCCCACCTCAGACAAACCTGGAAGTCCATATCGTTCTGTCACGCACTTCGACTCGCTAGCTGTCATAGACATCCCTGGAGCAGACACCCTGGATAAATTATTCGATCATGCTGTCTCCAAGTTTGGGAAGAAGGAGAGCCTGGGAACCAGGGAAGTCCTAAGTGAAGAAAATGAAATGCAGCCAAATGGAAAGGTTTTTAAGAAG
Seq A exon
TTAATTCTCGGGAATTATAAATGGTTGAACTATCTCGAAGTGAACCGCCGAGTGAATAACTTCGGTAGTGGACTCACTGCACTGGGACTGAAGCCAAAGAGCACCATTGCCATTTTCTGTGAGACCAGGGCTGAATGGATGATTGCGGCACAGACCTGCTTTAAGTACAATTTTCCTC
Seq C2 exon
TTGTGACTTTATATGCCACCCTTGGCAGAGAAGCTGTAGTTCATGGGTTAAATGAATCTGAGGCTACATATCTGATTACTAGTGTTGAACTTCTGGAGAGTAAACTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018986-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.117 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(3.1=11.7)
A:
PF0050123=AMP-binding=FE(12.4=100)
C2:
PF0050123=AMP-binding=FE(7.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTAAGCCCACCTCAGACAA
R:
TACAGCTTCTCTGCCAAGGGT
Band lengths:
249-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]