GgaEX1006054 @ galGal3
Exon Skipping
Gene
ENSGALG00000008088 | ACSL4
Description
NA
Coordinates
chr4:13885805-13887901:+
Coord C1 exon
chr4:13885805-13886044
Coord A exon
chr4:13886332-13886509
Coord C2 exon
chr4:13887792-13887901
Length
178 bp
Sequences
Splice sites
3' ss Seq
GTTGCTGCCCCCTCCTCCAGTTA
3' ss Score
8.11
5' ss Seq
CTCGTGAGT
5' ss Score
8.41
Exon sequences
Seq C1 exon
AAGAAAAAGGCTATGGCAAAACGTTTAAAAGCTAAGCCCATCTCGGACAAACCTGGAAGCCCCTACCGCTCCGTCACTCATCTTGACTCACTAGCAAACATAAACATTCCTGGAGCAGACACGTTGGACAAACTGTTTGACCACGCGTTAGCAAAGTTTGGGAAAAAGGACTGTCTTGGGACCAGAGAAATACTGAGTGAAGAAAATGAAATGCAACCAAACGGAAAAGTTTTCAAAAAG
Seq A exon
TTAATCTTAGGAACCTACAGATGGCTGTCCTATGAAGAAGTAAATCAGAAAGTGAATCGCTTGGGGAGCGGACTGATAGCCCTGGGACTAACCCCAAAGAGCACCGTTGTTATCTTCTGCGAGACCCGAGCAGAATGGATGATCGCAGCCCTGGCCTGCTTCAAGTACAACTTTCCTC
Seq C2 exon
TTGTTACCTTGTATGCTACACTGGGTGAAGAGGCAGTAACCTATGGTCTCAATGAATGTGGAGCGTCGTATCTGATCACCAGTGCAGAGCTTCTTGAGAGCAAACTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008088-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(3.1=19.0)
A:
PF0050123=AMP-binding=FE(12.4=100)
C2:
PF0050123=AMP-binding=FE(7.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTAAGCCCATCTCGGACAA
R:
AGGTTACTGCCTCTTCACCCA
Band lengths:
253-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]