GgaEX0012006 @ galGal3
Exon Skipping
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19046140-19067790:+
Coord C1 exon
chr12:19046140-19046210
Coord A exon
chr12:19050544-19050836
Coord C2 exon
chr12:19067675-19067790
Length
293 bp
Sequences
Splice sites
3' ss Seq
ACTTCTCTGTTTTTCCAAAGAGG
3' ss Score
6.99
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
CCTTGTGGATGACCGGTGTGTTGTACAGCCAGAAGCAGGTGACCTTAATAACCCACCCAAAAAGTTCAGAG
Seq A exon
AGGCAAATGCCATGCAAAGAAGAGCTGATGCTAAGGGTGCTGATAAGATGCAGTGGAAAATCAAAAGAAACTTCAAGGTTAGTGTGATGGATGAGGGAAAGAAGGAAAATAGAGCCTAATATTGTGCCTATAACATCTTTGAAACTAAAGTATTGGTCATTTATTGCTGGAAGGGTGTATCTTACAGAAGTAGGATACTGTTAAATATCTGAAATATATTTTCACAGGCTTGATGAGGAATCCTTTAGTATGAGTTGAAGTATTTATATAACTGTACCAGAGAACTGCCAACT
Seq C2 exon
ATTGCCTGTTCAAACTATGTCCCATGAACCGGTACTCTGCTCAAAAACAGTTCTGGAAAGCAGCAAAGCCAGGAGCCAACAGCACGACAGATGCAGTGCTGCTCAACAAGCTTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=0.487 C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(10.6=100)
A:
PF087096=Ins145_P3_rec=PD(42.2=95.0)
C2:
PF087096=Ins145_P3_rec=FE(16.8=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGTGGATGACCGGTGTG
R:
CAGCACTGCATCTGTCGTGC
Band lengths:
172-465
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]