GgaEX1030849 @ galGal3
Exon Skipping
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19042283-19067790:+
Coord C1 exon
chr12:19042283-19042374
Coord A exon
chr12:19046140-19046210
Coord C2 exon
chr12:19067675-19067790
Length
71 bp
Sequences
Splice sites
3' ss Seq
GATTTCTCATTTCTTTGCAGCCT
3' ss Score
8.8
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ATGACCGACAAGATGTCGAGCTTCCTTCATATTGGAGATATTTGTTCTCTCTATGCAGAGGGCTCAACCAATGGATTTATTAGCACTTTGGG
Seq A exon
CCTTGTGGATGACCGGTGTGTTGTACAGCCAGAAGCAGGTGACCTTAATAACCCACCCAAAAAGTTCAGAG
Seq C2 exon
ATTGCCTGTTCAAACTATGTCCCATGAACCGGTACTCTGCTCAAAAACAGTTCTGGAAAGCAGCAAAGCCAGGAGCCAACAGCACGACAGATGCAGTGCTGCTCAACAAGCTTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'0-4,'0-2,3-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.136 C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=PU(11.9=87.1)
A:
PF087096=Ins145_P3_rec=FE(10.6=100)
C2:
PF087096=Ins145_P3_rec=FE(16.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGATGTCGAGCTTCCTTCA
R:
ACTGCATCTGTCGTGCTGTTG
Band lengths:
182-253
Functional annotations
There are 1 annotated functions for this event
PMID: 9808459
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: western blot. ELM ID: ELMI001694; ELM sequence: PPKKF; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]