RnoEX6014546 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140268436-140362586:+
Coord C1 exon
chr4:140268436-140268543
Coord A exon
chr4:140272570-140272640
Coord C2 exon
chr4:140362471-140362586
Length
71 bp
Sequences
Splice sites
3' ss Seq
ATTTGTTTTTCTTTTTGCAGCTT
3' ss Score
10.59
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
GCTTTTCAACAAGGACATGTCTGACAAAATGTCTAGTTTCCTACATATCGGAGACATTTGTTCTCTGTATGCAGAGGGATCTACGAATGGATTTATCAGCACCTTGGG
Seq A exon
CTTGGTTGATGACCGTTGCGTTGTACAGCCAGAAGCTGGGGACCTTAACAATCCACCCAAGAAATTCAGAG
Seq C2 exon
ACTGCCTCTTTAAGCTATGTCCTATGAATCGATATTCTGCACAGAAGCAGTTCTGGAAAGCTGCTAAGCCCGGGGCCAACAGTACAACAGATGCGGTGCTGCTCAACAAATTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'7-9,'7-7,12-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=PU(11.9=87.1)
A:
PF087096=Ins145_P3_rec=FE(11.9=100)
C2:
PF087096=Ins145_P3_rec=FE(18.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACAAGGACATGTCTGACA
R:
GGGCTTAGCAGCTTTCCAGAA
Band lengths:
174-245
Functional annotations
There are 1 annotated functions for this event
PMID: 9808459
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: western blot. ELM ID: ELMI001694; ELM sequence: PPKKF; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]