DreEX6023201 @ danRer10
Exon Skipping
Gene
ENSDARG00000014655 | itpr1a
Description
inositol 1,4,5-trisphosphate receptor, type 1a [Source:ZFIN;Acc:ZDB-GENE-070604-3]
Coordinates
chr6:39933272-39939853:+
Coord C1 exon
chr6:39933272-39933380
Coord A exon
chr6:39935557-39935627
Coord C2 exon
chr6:39939738-39939853
Length
71 bp
Sequences
Splice sites
3' ss Seq
TATTTTTTTGTTTTAATCAGGTT
3' ss Score
9.55
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GTGCTGGAGTTTTTGCCATGGTGGACAAATTGTCTAGTTTCCTGCACATTGGGGACGTTTGTTCCCTTTATGCTGAAGGCTCTACTAGTGGCTTCATCAGCACTCTGGG
Seq A exon
GTTGGTTGATGACCGATGTGTTGTTCAACCAGATGCCGGAGACCTGAATAACCCACCTAAAAAGTTTCGGG
Seq C2 exon
ACTGTCTGTTCAGACTGTGTCCCATGAACAGATATTCGGCACAGAAACAGTTCTGGAAAGCTGCCAAACCTGGAGGAACTAGCACCACAGATACTGTCCTGCTTAACAAACTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014655-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=PU(11.9=87.1)
A:
PF087096=Ins145_P3_rec=FE(10.6=100)
C2:
PF087096=Ins145_P3_rec=FE(16.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGAGTTTTTGCCATGGT
R:
CAGGTTTGGCAGCTTTCCAGA
Band lengths:
180-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]