MmuEX0024722 @ mm10
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108236978-108339622:+
Coord C1 exon
chr6:108236978-108237085
Coord A exon
chr6:108241264-108241334
Coord C2 exon
chr6:108339507-108339622
Length
71 bp
Sequences
Splice sites
3' ss Seq
ATTTGTTTTTCTTTTTGCAGCTT
3' ss Score
10.59
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
GCTTTCCAACACGGACATGTCTGACAAAATGTCGAGTTTCCTACATATTGGAGACATTTGTTCTCTGTATGCGGAGGGATCTACGAATGGATTTATCAGCACCTTAGG
Seq A exon
CTTGGTTGATGACCGTTGTGTTGTACAGCCAGAAGCCGGGGACCTTAACAATCCACCCAAGAAATTCAGAG
Seq C2 exon
ACTGCCTCTTTAAGCTATGTCCTATGAATCGATACTCCGCACAGAAACAGTTCTGGAAAGCTGCTAAGCCCGGGGCCAACAGCACTACAGATGCAGTGCTGCTCAACAAATTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102_MULTIEX1-2/59=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=PU(11.9=87.1)
A:
PF087096=Ins145_P3_rec=FE(10.6=100)
C2:
PF087096=Ins145_P3_rec=FE(16.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACACGGACATGTCTGACA
R:
GGGCTTAGCAGCTTTCCAGAA
Band lengths:
174-245
Functional annotations
There are 1 annotated functions for this event
PMID: 9808459
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: western blot. ELM ID: ELMI001694; ELM sequence: PPKKF; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types