MmuEX1015456 @ mm10
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108236978-108241334:+
Coord C1 exon
chr6:108236978-108237085
Coord A exon
chr6:108238299-108238325
Coord C2 exon
chr6:108241264-108241334
Length
27 bp
Sequences
Splice sites
3' ss Seq
ACCCCATTCTTATTTTTCAGCAT
3' ss Score
10.32
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
Exon sequences
Seq C1 exon
GCTTTCCAACACGGACATGTCTGACAAAATGTCGAGTTTCCTACATATTGGAGACATTTGTTCTCTGTATGCGGAGGGATCTACGAATGGATTTATCAGCACCTTAGG
Seq A exon
CATTGACTTCAGTACTGTACAGCAGTG
Seq C2 exon
CTTGGTTGATGACCGTTGTGTTGTACAGCCAGAAGCCGGGGACCTTAACAATCCACCCAAGAAATTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102_MULTIEX1-1/59=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=PU(11.9=87.1)
A:
PF087096=Ins145_P3_rec=FE(3.8=100)
C2:
PF087096=Ins145_P3_rec=FE(10.6=100)
Main Inclusion Isoform:
ENSMUST00000032192fB11680
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACACGGACATGTCTGACA
R:
ACAACACAACGGTCATCAACC
Band lengths:
127-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types