RnoEX0045412 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140268436-140272640:+
Coord C1 exon
chr4:140268436-140268543
Coord A exon
chr4:140269774-140269900
Coord C2 exon
chr4:140272570-140272640
Length
127 bp
Sequences
Splice sites
3' ss Seq
CCCCTGTTCTTATTTTTCAGCAT
3' ss Score
11.22
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GCTTTTCAACAAGGACATGTCTGACAAAATGTCTAGTTTCCTACATATCGGAGACATTTGTTCTCTGTATGCAGAGGGATCTACGAATGGATTTATCAGCACCTTGGG
Seq A exon
CATTGACTTCAGTACTGTACAGCAGTGGTAAGCACTCTGAGCCTGGTGGGTGTTCACTGTGTGCCCGGTGCTGTTCTGAATCCTGGGCCTCCATTATCCCCCTAACCCCCAAGCAGCCCTCTTCCTG
Seq C2 exon
CTTGGTTGATGACCGTTGCGTTGTACAGCCAGAAGCTGGGGACCTTAACAATCCACCCAAGAAATTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=PU(11.9=87.1)
A:
PF087096=Ins145_P3_rec=PU(1.5=7.0)
C2:
PF087096=Ins145_P3_rec=FE(11.9=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTTCAACAAGGACATGTCTGAC
R:
TCTGAATTTCTTGGGTGGATTGT
Band lengths:
178-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]